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Fudgy sourdough chocolate cookies bake up like the chewy edge of a brownie, intensely chocolaty, crackly-topped, and loaded with dark chocolate. The sourdough discard adds depth, and browned butter takes the flavor next-level. No sourdough starter? Make our chocolate truffle cookies.

A stack of four sourdough chocolate cookies on a white counter.
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Browned butter = big flavor + better texture: Browning drives off water, which helps balance the moisture from the sourdough discard. Bonus: it adds deep, nutty richness you won’t get from plain melted butter.

Sourdough discard boosts depth: Adds subtle tang and complexity without tasting like bread.

Double chocolate hit: Melted chocolate and cocoa powder make sure the chocolate flavor punches through.

Just the right chew: Ditching the egg whites makes room for the liquid in the sourdough, and egg yolks keep the texture fudgy, not cakey. A long chill in the fridge gives structure.

If you’re into that deep, rich cookie vibe, don’t miss our sourdough chocolate chip cookies or our sourdough brownies

A thick chocolate cookie made with sourdough discard.

Recipe Tips

Watch the browned butter: Brown the butter just until you see amber flecks. Go too long, and it turns bitter.

Use discard that’s not too old: Older discard still works fine, but for the best flavor, use discard that’s no more than 4 to 5 days old.

Chill the dough: At least 6 hours in the fridge. It improves the flavor and helps the cookies hold shape.

Flatten if you like thinner cookies: These don’t spread much, so press them down before baking if you want less chunk.

Weigh your ingredients: Especially flour. Too much and you’ll lose the fudgy texture.

Bake from frozen: You can freeze pre-scooped dough and bake straight from the freezer. Just tack on a couple minutes.

Sourdough fudge cookies with flaky sea salt on top.

Chocolate Sourdough Discard Cookies

These fudgy sourdough chocolate cookies are what happens when brownie edges and cookie middles team up. They’re intense, chewy, and deeply chocolaty. You’ll want a stash of dough in the freezer at all times.

Want more sourdough discard recipes? Try my sourdough chocolate cake or my sourdough cake donuts.

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Four sourdough chocolate cookies on a white counter.
Prep Time: 20 minutes
Cook Time: 9 minutes
Chill Time: 6 hours
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Sourdough Chocolate Fudge Cookies

Thick, brownie-like cookies made with sourdough discard, browned butter, and two kinds of chocolate. Chilling the dough deepens the flavor and gives them chewy centers with crisp edges.

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Servings: 30 cookies
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Ingredients 

  • 1 cup unsalted butter, 16 tablespoons; 226 grams
  • 1 cup dark chocolate, chopped, or semi sweet chocolate chips, 170 grams
  • ¾ cup brown sugar, packed, 160 grams
  • ½ cup granulated sugar, 100 grams
  • ¾ cup sourdough discard, 170 grams
  • 2 to 3 tablespoons instant espresso powder
  • 2 teaspoons vanilla extract
  • 2 egg yolks, 30 to 36 grams
  • 2-¼ cups all-purpose flour, 270 grams
  • ½ cup unsweetened cocoa powder, 42 grams
  • 1-½ teaspoons baking powder
  • 1 teaspoon baking soda
  • 1-¼ teaspoon salt
  • 2 cups semisweet chocolate chips, or chopped chocolate
  • 1 to 2 tablespoons large-flake sea salt (such as Maldon), optional

Instructions 

Brown the Butter & Melt the Chocolate

  • In a small saucepan over medium heat, melt the butter, stirring frequently. It will foam and then the milk solids will start to turn golden brown. Keep stirring until you see deep amber flecks forming.
    A spatula pushing foam aside from the top of golden brown butter.
  • Remove the pan from heat as soon as the milk solids turn deep amber to prevent burning. Let the butter cool for 1 to 2 minutes until it’s warm but no longer scorching hot.
  • Pour the warm browned butter into a large mixing bowl. Add the 1 cup of chopped dark chocolate and stir until smooth and fully melted. If the butter cooled too much to melt the chocolate, zap it in the microwave for a few seconds.
    Melting chocolate with warm brown butter in a bowl.

Mix the Dough

  • Add the brown sugar and granulated sugar to the bowl with the butter-chocolate mixture. Stir until well combined.
    Adding sugar to a mixing bowl with melted chocolate.
  • Mix in the sourdough discard, espresso powder, and vanilla extract, stirring until fully incorporated.Blend in the egg yolks, mixing until smooth.
    Pouring sourdough discard into cookie batter.
  • Place a metal sifter over the bowl and sift in the flour, cocoa powder, baking powder, baking soda, and salt. Stir until just combined, ensuring no dry streaks remain.
    sifting dry ingredients into the sourdough cookie dough.
  • Fold in the semi-sweet chocolate chips or chopped chocolate.
    Stirring chocolate chips into sourdough fudge cookies.

Portion and Chill

  • Using a #40 cookie scoop (about 2 tablespoons), scoop the dough into balls and place them close together on a baking sheet. (If you want large cookies, use ¼ cup scoops).
  • Cover with plastic wrap and refrigerate for at least 6 hours or up to 72 hours. (Chilling helps develop the flavor and improves texture.)

Bake the Cookies

  • When ready to bake, preheat the oven to 350°F. Line a baking sheet with parchment paper.
  • Arrange the chilled dough balls 2 inches apart on the prepared baking sheet.
    Balls of chocolate sourdough cookie dough on a sheet pan.
  • Bake for 8 to 9 minutes, or until the edges are set but the centers still look slightly soft. If using a ¼ cup scoop for larger cookies, bake for 11 to 13 minutes.
    Freshly baked fudgy cookies on a sheet pan.
  • Remove from the oven and immediately sprinkle with Fleur de sel (if using). The cookies will look soft and slightly underbaked when they come out, but don’t worry, as they cool, the chocolate and butter will firm up.
    They’ll be too delicate to move right away, so let them sit on the baking sheet for at least 5 minutes before transferring them to a wire rack to cool completely.

Notes

Watch the butter: Stir constantly and pull it as soon as you see amber flecks. It can burn fast.
Espresso is optional: It boosts chocolate flavor, but skip it if you’re not into coffee.
Chill the dough: It hydrates the flour and gives the discard time to ferment for better flavor.
These cookies stay thick: For flatter cookies, press the dough balls down before baking.
Weigh your flour: Or spoon and level if using cups. Don’t scoop straight from the bag.
Salt while warm: Sprinkle flaky salt on right out of the oven so it sticks.
Sourdough discard thins over time: Older discard will work, but 4 to 5 days old gives better texture. 
Let them rest: The cookies are fragile straight from the oven. Give them a few minutes before moving.
Slightly soft is perfect: Pull them before the centers are fully set. They’ll finish as they cool.
Freeze-friendly: Bake straight from frozen, just add 1 to 2 minutes to the bake time.

Nutrition

Serving: 1cookie, Calories: 241kcal, Carbohydrates: 27g, Protein: 3g, Fat: 14g, Saturated Fat: 8g, Polyunsaturated Fat: 1g, Monounsaturated Fat: 4g, Trans Fat: 0.3g, Cholesterol: 30mg, Sodium: 161mg, Potassium: 164mg, Fiber: 2g, Sugar: 15g, Vitamin A: 215IU, Calcium: 35mg, Iron: 2mg

Nutrition information is automatically calculated, so should only be used as an approximation.

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About Dahn Boquist

Dahn Boquist is a retired nurse turned recipe developer, home cook, and baker with years of hands-on experience creating and testing from-scratch recipes. She specializes in whole-food cooking with creative twists on classic dishes. When she’s not in the kitchen, she enjoys sharing meals with family, exploring the Pacific Northwest, and spending time with her grandchildren.

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